Package: SEEPS
Title: Sequence evolution and epidemiological process simulator
Version: 0.2.0
Authors@R: 
    c(person(given = "Michael",
           family = "Kupperman",
           role = c("aut", "cre"),
           email = "mkupperman@lanl.gov",
           comment = c(ORCID = "0000-0003-0340-488X")),
      person(given = "Ruian",
            family = "Ke",
            role = "aut",
            email = "rke@lanl.gov",
            comment = c(ORCID="0000-0001-5307-8934")),
      person(given = "Erik",
             family = "Lundgren",
             email = "elundgren@lanl.gov",
             role = "aut")
    )
Description: A modular, modern simulation suite and toolkit for
        simulating transmission networks, phylogenies, and evolutionary
        pairwise distance matrices under different models and
        assumptions for viral/sequence evolution. While intially
        developed for HIV, SEEPS offers modular utilities for custom
        workflows for extension beyond HIV.
License: file LICENSE
maintainer: Michael D. Kupperman <mkupperman@lanl.gov>
Encoding: UTF-8
Suggests: testthat (>= 2.1.0), rlang (>= 1.0.0), knitr, rmarkdown
Imports: ape (>= 5.0.0), phyclust (>= 0.1), rngtools (>= 1.0.0),
        stringr (>= 1.3.1), stats
RoxygenNote: 7.3.2
Depends: R (>= 3.5.0)
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev
Repository: https://molevolepid.r-universe.dev
Date/Publication: 2026-02-12 21:28:09 UTC
RemoteUrl: https://github.com/MolEvolEpid/SEEPS
RemoteRef: HEAD
RemoteSha: d987ce02234beecd0a1de51f709a672c3ed04c45
NeedsCompilation: no
Packaged: 2026-10-11 09:47:06 UTC; root
Author: Michael Kupperman [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0340-488X>),
  Ruian Ke [aut] (ORCID: <https://orcid.org/0000-0001-5307-8934>),
  Erik Lundgren [aut]
Maintainer: Michael Kupperman <mkupperman@lanl.gov>